Thanks for the reply. I am using the ClearOS Web Site set up from the webconfig. The default site works fine but not the other (dynamic DNS) ones. I am using Sanboxed Folder Layout. It won't let me change the folder layout. My index files are in the root directories of the website directories (/var/www/virtual/<website>/). Permissions for index.html files are -rwxrwxr--x david admin for one and -rw-rw-r-- david admin for the other two. I don't think I have a .htaccess file. I am certain I did not try to create one.

#----------------------------------------------------------------
# WARNING: This file is automatically created by webconfig.
#----------------------------------------------------------------


# Authentication mechanism
DefineExternalAuth pwauth pipe /usr/bin/pwauth
DefineExternalGroup pwauth pipe /usr/bin/unixgroup

# -----------------------------------------------#
# Web Site
# -----------------------------------------------#

<VirtualHost *:80>
ServerName <URLnameofdefaultsite>
ServerAlias *.<URLnameofdefaultsite>
DocumentRoot /var/www/html
ErrorLog /var/log/httpd/error_log
CustomLog /var/log/httpd/access_log combined
</VirtualHost>

<Directory /var/www/html>
Options +Indexes +FollowSymLinks -IncludesNOExec
AllowOverride All
Require all granted
<FilesMatch \.php$>
SetHandler None
ForceType text/plain
SetHandler application/x-httpd-php-source
</FilesMatch>
</Directory>

# -----------------------------------------------#
# Web Site
# -----------------------------------------------#

<VirtualHost *:80>
ServerName <URLnameofvirtualsite1>
ServerAlias*. <URLnameofvirtualsite1>
DocumentRoot /var/www/virtual/<URLnameofvirtualsite1>/html
ErrorLog /var/www/virtual/<URLnameofvirtualsite1>/logs/<URLnameofvirtualsite1>_error_log
CustomLog /var/www/virtual/barrymcgowan.net/logs/<URLnameofvirtualsite1>_access_log combined
</VirtualHost>

<Directory /var/www/virtual/<URLnameofvirtualsite1>>
Options -Indexes +FollowSymLinks -IncludesNOExec
AllowOverride All
Require all granted
<FilesMatch \.php$>
SetHandler None
ForceType text/plain
SetHandler application/x-httpd-php-source
</FilesMatch>
</Directory>

# -----------------------------------------------#
# Web Site
# -----------------------------------------------#

<VirtualHost *:80>
ServerName <URLnameofvirtualsite2>
ServerAlias *.<URLnameofvirtualsite2>
DocumentRoot /var/www/virtual/<URLnameofvirtualsite2>/html
ErrorLog /var/www/virtual/<URLnameofvirtualsite2>/logs/<URLnameofvirtualsite2>_error_log
CustomLog /var/www/virtual/<URLnameofvirtualsite2>/logs/<URLnameofvirtualsite2>_access_log combined
</VirtualHost>

<Directory /var/www/virtual/<URLnameofvirtualsite2>>
Options +Indexes +FollowSymLinks -IncludesNOExec
AllowOverride All
Require all granted
<FilesMatch \.php$>
SetHandler None
ForceType text/plain
SetHandler application/x-httpd-php-source
</FilesMatch>
</Directory>

# -----------------------------------------------#
# Web Site
# -----------------------------------------------#

<VirtualHost *:80>
ServerName <URLnameofvirtualsite3>
ServerAlias *.<URLnameofvirtualsite3>
DocumentRoot /var/www/virtual/<URLnameofvirtualsite3>/html
ErrorLog /var/www/virtual/<URLnameofvirtualsite3>/logs/9-11.dnsalias.net_error_log
CustomLog /var/www/virtual/<URLnameofvirtualsite3>/logs/9-11.dnsalias.net_access_log combined
</VirtualHost>

<Directory /var/www/virtual/<URLnameofvirtualsite3>>
Options -Indexes -FollowSymLinks -IncludesNOExec
AllowOverride All
Require all granted
<FilesMatch \.php$>
SetHandler None
ForceType text/plain
SetHandler application/x-httpd-php-source
</FilesMatch>
</Directory>



#----------------------------------------------------------------
# WARNING: This file is automatically created by webconfig.
#----------------------------------------------------------------


# Authentication mechanism
DefineExternalAuth pwauth pipe /usr/bin/pwauth
DefineExternalGroup pwauth pipe /usr/bin/unixgroup

# -----------------------------------------------#
# Web Site
# -----------------------------------------------#

<VirtualHost *:443>
ServerName <URLnameofdefaultsite>
ServerAlias *.<URLnameofdefaultsite>
DocumentRoot /var/www/html
ErrorLog /var/log/httpd/error_log
CustomLog /var/log/httpd/access_log combined
SSLEngine on
SSLCertificateFile /etc/pki/CA/sys-0-cert.pem
SSLCertificateKeyFile /etc/pki/CA/private/sys-0-key.pem
SSLCACertificateFile /etc/pki/CA/ca-cert.pem
# No weak export crypto allowed
SSLHonorCipherOrder on
SSLProtocol all -SSLv2 -SSLv3 -TLSv1
SSLCipherSuite ECDH+AESGCMH+AESGCM:ECDH+AES256H+AES256:ECDH+AES128H+AES:ECDH+3DESH+3DES:RSA+AESGCM:RSA+AES:RSA+3DES:!3DES:!aNULL:!MD5
SetEnvIf User-Agent ".*MSIE.*" nokeepalive ssl-unclean-shutdown downgrade-1.0 force-response-1.0
</VirtualHost>

# -----------------------------------------------#
# Web Site
# -----------------------------------------------#

<VirtualHost *:443>
ServerName <URLnameofvirtualsite1>
ServerAlias *.<URLnameofvirtualsite1>
DocumentRoot /var/www/virtual/<URLnameofvirtualsite1>/html
ErrorLog /var/www/virtual/<URLnameofvirtualsite1>/logs/<URLnameofvirtualsite1>_error_log
CustomLog /var/www/virtual/<URLnameofvirtualsite1>/logs/<URLnameofvirtualsite1>_access_log combined
SSLEngine on
SSLCertificateFile /etc/pki/CA/sys-0-cert.pem
SSLCertificateKeyFile /etc/pki/CA/private/sys-0-key.pem
SSLCACertificateFile /etc/pki/CA/ca-cert.pem
# No weak export crypto allowed
SSLHonorCipherOrder on
SSLProtocol all -SSLv2 -SSLv3 -TLSv1
SSLCipherSuite ECDH+AESGCMH+AESGCM:ECDH+AES256H+AES256:ECDH+AES128H+AES:ECDH+3DESH+3DES:RSA+AESGCM:RSA+AES:RSA+3DES:!3DES:!aNULL:!MD5
SetEnvIf User-Agent ".*MSIE.*" nokeepalive ssl-unclean-shutdown downgrade-1.0 force-response-1.0
</VirtualHost>

# -----------------------------------------------#
# Web Site
# -----------------------------------------------#

<VirtualHost *:443>
ServerName <URLnameofvirtualsite2>
ServerAlias *.<URLnameofvirtualsite2>
DocumentRoot /var/www/virtual/URLnameofvirtualsite2>/html
ErrorLog /var/www/virtual/<URLnameofvirtualsite2>/logs/<URLnameofvirtualsite2>_error_log
CustomLog /var/www/virtual/<URLnameofvirtualsite2>/logs/<URLnameofvirtualsite2>_access_log combined
SSLEngine on
SSLCertificateFile /etc/pki/CA/sys-0-cert.pem
SSLCertificateKeyFile /etc/pki/CA/private/sys-0-key.pem
SSLCACertificateFile /etc/pki/CA/ca-cert.pem
# No weak export crypto allowed
SSLHonorCipherOrder on
SSLProtocol all -SSLv2 -SSLv3 -TLSv1
SSLCipherSuite ECDH+AESGCMH+AESGCM:ECDH+AES256H+AES256:ECDH+AES128H+AES:ECDH+3DESH+3DES:RSA+AESGCM:RSA+AES:RSA+3DES:!3DES:!aNULL:!MD5
SetEnvIf User-Agent ".*MSIE.*" nokeepalive ssl-unclean-shutdown downgrade-1.0 force-response-1.0
</VirtualHost>

# -----------------------------------------------#
# Web Site
# -----------------------------------------------#

<VirtualHost *:443>
ServerName <URLnameofvirtualsite3>
ServerAlias *.<URLnameofvirtualsite3>
DocumentRoot /var/www/virtual/<URLnameofvirtualsite3>/html
ErrorLog /var/www/virtual/<URLnameofvirtualsite3>/logs/<URLnameofvirtualsite3>_error_log
CustomLog /var/www/virtual/<URLnameofvirtualsite3>/logs/<URLnameofvirtualsite3>_access_log combined
SSLEngine on
SSLCertificateFile /etc/pki/CA/sys-0-cert.pem
SSLCertificateKeyFile /etc/pki/CA/private/sys-0-key.pem
SSLCACertificateFile /etc/pki/CA/ca-cert.pem
# No weak export crypto allowed
SSLHonorCipherOrder on
SSLProtocol all -SSLv2 -SSLv3 -TLSv1
SSLCipherSuite ECDH+AESGCMH+AESGCM:ECDH+AES256H+AES256:ECDH+AES128H+AES:ECDH+3DESH+3DES:RSA+AESGCM:RSA+AES:RSA+3DES:!3DES:!aNULL:!MD5
SetEnvIf User-Agent ".*MSIE.*" nokeepalive ssl-unclean-shutdown downgrade-1.0 force-response-1.0