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Sorry for the long wait. This really has taken quite a bit of time to narrow down. The file in error is:
/usr/clearos/framework/application/config/config.php
There is a bunch of things enigmatic with this bug. One of them is that the gconsole can actually 'seem' to work but won't for example, on a system where the interface comes up, it can actually bug out only if you make a change such as re-applying the DNS servers. So for a while my tests were upgrades seem to work only 'seemed' that way.
I'm going through the commits to see when the bug was introduced:
https://gitlab.com/clearos/clearfoundation/clearos-framework/commits/master/application/config/config.php -